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Admission for Doctoral Schools 2022/2023

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Biological Sciences - The biological role of sRNA OmrA and its impact on the level of virulence and adaptability of Yersinia enterocolitica enteropathogen

Details
Code 3-SzD-NSP-NBiol-PreludiumBis-Raczkowska
Organizational unit Doctoral School of Exact and Natural Sciences
Area/discipline Biological Sciences
Form of studies Full-time
Language(s) of instruction English, Polish
Duration 4 years
Office opening hours ul. S. Banacha 2c
02-097 Warszawa
tel: 22 55 22 144, 22 55 22 145
poniedziałek-piątek 10:00-14:00
rekrutacja.nsp@uw.edu.pl
WWW address https://szkolydoktorskie.uw.edu.pl/sdnsip
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  • Higher education
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Past phases in this registration:
  • Phase 1 (23.05.2022 00:00 – 10.06.2022 23:59)

BEYOND-THE-LIMIT RECRUITMENT

The main element of education at the Doctoral School of Exact and Natural Sciences (SDNSP) is the implementation of an individual PhD project in one of the scientific disciplines (Astronomy, Computer Science, Mathematics, Biological Sciences, Chemical Sciences, Physical Sciences, Earth and Environmental Sciences) that are covered by the school, under supervision of a faculty member chosen by the doctoral student.

Education at SDNSP includes courses in the form of specialization and monographic lectures, workshops, seminars, two-day symposiums as well as courses and trainings to improve the skills of doctoral students in teaching.

The graduate of the Doctoral School of Exact and Natural Sciences has a highly specialized education acquired under the supervision of leading scientists and is prepared to undertake independent scientific and teaching activities at universities and research institutes. In addition, the graduate will have gained extensive knowledge beyond the discipline in which he/she prepared his doctoral dissertation, as well as skills in conducting scientific and teaching activities

Education

Education program

The education lasts 4 years. It includes obligatory classes (no more than 300 hours in total during the whole period of education) and the implementation of an individual research program, carried out under the supervision of a supervisor.

IRK registration instruction

Instruction


Principal Investigator: dr hab. Adrianna Raczkowska 

E-mail: ad.raczkowska@uw.edu.pl

Project description

The main scientific goal of the project is to define the objectives of sRNA OmrA activity in Yersinia enterocolitica strains with a low (strain Ye9, bioserotype 2/O:9) and high (strain 8081, bioserotype 1B/O:8) degree of virulence. The genes whose expression will be tested were selected as a result of in silico analyzes. Among them there are those coding important virulence factors of these enteropathogens. Information on the change in gene expression profile under the influence of OmrA will be verified by RT-qPCR and Northern blot as well as by testing the activity of the constructed translational fusions with the gfp reporter gene. In addition, EMSA tests will be performed to assess the formation and migration rate of potential OmrA/mRNA complexes in the presence or absence of the Hfq chaperone. Molecular tests will be enriched with the phenotypic characteristics of Y. enterocolitica strains differing in OmrA activity, i.e. the assessment of mobility, microcolony and biofilm formation, adhesion/invasion capacity in the epithelial cell line, and the degree of insecticidal activity.

Requirement

  • completed master's studies in the field of biology, biotechnology or related;
  • knowledge of the mechanisms of regulation of gene expression in bacteria, especially post-transcriptional regulation by sRNA in the context of pathogenesis and adaptation to various stress conditions;
  • good command of spoken and written English;
  • diligence, accuracy, very good organization of work;
  • communicativeness and the ability to work in a team;
  • strong motivation to work and willingness to carry out research as part of doctoral studies;
  • knowledge of techniques in the field of microbiology and/or molecular biology, i.e. work with bacterial DNA/RNA, studies of bacteria phenotypic properties (e.g. analysis of bacterial biofilm and/or bacterial survival tests in tissue cultures);
  • knowledge of the RT-qPCR method will be an additional advantage.

The  call  is  open  to  all  those  who  are  not  PhD  holders  and  are  not  students  at  the  doctoral  schools.

Admission limit: 1

Recruitment schedule

  • registration in the Internet Registration of Candidates, referred to as “IRK”, submitting an application to the IRK: May 23 - June 10, 2022 
  • qualification procedure:  June 20 -  June 22, 2022
  • announcement of the ranking list: until July 1, 2022
  • accepting documents from qualified candidates: July 4 - September 23, 2022
  • announcement of the list of accepted candidates: until 30 September 2022

Recruitment fee

The admission fee is PLN 200 and is paid to the candidate's individual account generated in the IRK system.

Form of the selection procedure

Evaluation of the following elements shall be taken into account in the selection process:

1) scientific activity of the candidate based on a CV or resumé, documented with scans of materials attached to the application for admission to the School;

2) interview with the candidate / qualification examination;

3) other achievements.

Language of the selection process, including the interview

The interview shall be carried out in Polish or English – in accordance with the candidate’s preferences presented in IRK. If the Polish language is selected, the interview may include parts in English.

Required documents

The candidate shall submit a School admission application only through the IRK. The application shall include the following:

1)     indication of the selected discipline in which the candidate plans to pursue education, PESEL number or passport number, nationality, contact information (residence address, e-mail address, telephone number), information whether the candidate agrees to receive administrative decisions by means of electronic communication, consent for processing of personal data for the purposes of the admissions procedure;

 2)    a scan of the graduation diploma of uniform master’s degree or postgraduate studies or an equivalent diploma obtained under separate regulations, or in the case of candidates pursuing education in the European Higher Education Area – a certificate of holding a master's degree or a statement that the diploma or certificate conforming the award of a master's degree will be delivered by 23rd of September 2022, in the case of a diploma equivalent to a uniform master’s degree or postgraduate studies graduation diploma, a candidate shall justify such equivalence. In case the diploma was issued in a language other than Polish or English, the candidate shall attach its certified translation; 

3)   a resume or CV outlining the candidate’s scientific activity, including scholarly interests and achievements during the five calendar years preceding the application (if a candidate became a parent during this time, as evidenced by a scan of the child’s birth certificate attached to the application, this period shall be extended by two years for each child), including, but not limited to:

-        publications,

-        research and organizational work at student research groups,

-        participation in scientific conferences,

-        participation in research projects,

-        awards and honorable mentions,

-        research internships,

-        research skills training programs completed,

-        activities promoting science,

-        activity in science movement representative bodies,

-        average of their university grades,

-        professional career,

-        level of proficiency in foreign languages;

4)     scans of materials evidencing scientific activity mentioned in their CV and/or resume;

5)     a document confirming at least B2 proficiency level in English or a declaration of the level of proficiency in English allowing education at the School;

6)     the scan of a declaration by the planned supervisor, confirming their agreement to undertake the duties of a supervisor and of the number of doctoral students, for whom they perform the duties a designated supervisor, in accordance with the template constituting Appendix no.4 to the Resolution no. 17 of the Senate of the University of Warsaw of 20th January 2021 on rules of admission to doctoral schools at the University of Warsaw (the University of Warsaw Monitor of 2021, item 142), the candidate may also attach a scan of opinions of other academics about the candidate and their scientific activity. Template of the supervisor’s statement

7)     the photograph of a candidate’s face that allows for their identification;

8)     a declaration confirming whether the candidate was or is a doctoral student or a participant of doctoral studies or whether they have initiated a doctoral dissertation process or whether proceedings to award them a doctoral degree have been initiated – and if yes, the title of their doctoral dissertation or the research project prepared by a candidate, including the name and last name of the candidate’s tutor or supervisor;

9)    a declaration confirming that they have reviewed the Resolution no. 17 of the Senate of the University of Warsaw of 20th January 2021 on rules of admission to doctoral schools at the University of Warsaw (the University of Warsaw Monitor of 2021, item 142) and Articles 40 and 41 of the Code of Administrative Procedure;

10)  scanned transcripts of records of the graduate and postgraduate studies or the uniform Master’s degree studies, or equivalent documents (e.g. diploma supplement);

11)  abstract of the master’s thesis or master’s project in English (up to 3,000 characters with spaces);

Evaluation criteria

The committee shall evaluate the candidates by awarding them points for their competencies to  perform specific tasks in a research project and scientific achievements to date. On the basis thereof, the committee shall rank the candidates according to the following criteria:

 a) competencies to perform specific tasks in a research project (70% of the final score)

  • 3 points - very good
  • 2 points – good
  • 1 point – poor
  • 0 points - no competencies

 b)  publication track record, including publications in renowned scientific papers / magazines (30% of the final score)

  •  4 points – prominent
  • 3 points - very good
  • 2 points – good
  • 1 point – poor
  • 0 points - no publication track record

Scholarships

PRELUDIUM BIS doctoral scholarships shall amount to:

  • PLN 4266.00 gross per month, until the month in which a PhD student’s mid-term evaluation is performed at the doctoral school and
  • PLN 5119.00 gross per month, after the month in which a PhD student’s mid-term evaluation is performed at the doctoral school and

shall be awarded pursuant to the Act on Higher Education and Science of 20 July 2018.

Recruitment Legislation and Acts to Know